diff --git a/config.toml b/config.toml
index d3affcf..b0c8b68 100644
--- a/config.toml
+++ b/config.toml
@@ -2,6 +2,10 @@
 
 api-key = "<YOUR-KEY>"
 base-url = "api.openai.com"
+chroot-dir = "/home/bot/root"
+
+# If using chroot (recommended) then this will be relative.
+command-path = "/cmds"
 
 # If you don't already know the model name you can generally find a listing
 # on the models API pages.
diff --git a/src/command.rs b/src/command.rs
deleted file mode 100644
index e69de29..0000000
diff --git a/src/main.rs b/src/main.rs
index 270c344..b639706 100644
--- a/src/main.rs
+++ b/src/main.rs
@@ -3,6 +3,7 @@ use color_eyre::{
     eyre::WrapErr,
 };
 use human_panic::setup_panic;
+use std::os::unix::fs;
 use tracing::{
     Level,
     info,
@@ -10,12 +11,12 @@ use tracing::{
 use tracing_subscriber::FmtSubscriber;
 
 mod chat;
-mod command;
+mod commands;
 mod qna;
 mod setup;
 
-const DEFAULT_INSTRUCT: &'static str =
-"You are a shady, yet helpful IRC bot.  You try to give responses that can
+const DEFAULT_INSTRUCT: &str =
+    "You are a shady, yet helpful IRC bot.  You try to give responses that can
  be sent in a single IRC response according to the specification.";
 
 #[tokio::main]
@@ -36,6 +37,13 @@ async fn main() -> Result<()> {
     let settings = setup::init().await.wrap_err("Failed to initialize.")?;
     let config = settings.config;
 
+    // chroot if applicable.
+    if let Ok(chroot_path) = config.get_string("chroot-dir") {
+        fs::chroot(&chroot_path)
+            .wrap_err_with(|| format!("Failed setting chroot '{}'", chroot_path.to_string()))?;
+        std::env::set_current_dir("/").wrap_err("Couldn't change directory after chroot.")?;
+    }
+
     let handle = qna::new(
         config.get_string("api-key").wrap_err("API missing.")?,
         config
@@ -44,7 +52,9 @@ async fn main() -> Result<()> {
         config
             .get_string("model")
             .wrap_err("model string missing.")?,
-        config.get_string("instruct").unwrap_or_else(|_| DEFAULT_INSTRUCT.to_string()),
+        config
+            .get_string("instruct")
+            .unwrap_or_else(|_| DEFAULT_INSTRUCT.to_string()),
     )
     .wrap_err("Couldn't initialize LLM handle.")?;
     let mut c = chat::new(&config, &handle).await?;
diff --git a/src/setup.rs b/src/setup.rs
index 7453afa..5db02d9 100644
--- a/src/setup.rs
+++ b/src/setup.rs
@@ -1,15 +1,9 @@
 use clap::Parser;
-use color_eyre::{
-    Result,
-    eyre::WrapErr,
-};
+use color_eyre::{Result, eyre::WrapErr};
 use config::Config;
 use directories::ProjectDirs;
 use std::path::PathBuf;
-use tracing::{
-    info,
-    instrument,
-};
+use tracing::{info, instrument};
 
 // TODO: use [clap(long, short, help_heading = Some(section))]
 #[derive(Clone, Debug, Parser)]
@@ -23,6 +17,14 @@ pub(crate) struct Args {
     /// Base URL for the LLM API to use.
     pub(crate) base_url: Option<String>,
 
+    /// Directory to use for chroot (recommended).
+    #[arg(long)]
+    pub(crate) chroot_dir: Option<String>,
+
+    /// Root directory for file based command structure.
+    #[arg(long)]
+    pub(crate) command_dir: Option<String>,
+
     #[arg(long)]
     /// Instructions to the model on how to behave.
     pub(crate) intruct: Option<String>,
@@ -30,7 +32,7 @@ pub(crate) struct Args {
     #[arg(long)]
     pub(crate) model: Option<String>,
 
-    #[arg(long)]
+    #[arg(long = "channel")]
     /// List of IRC channels to join.
     pub(crate) channels: Option<Vec<String>>,
 
@@ -93,6 +95,8 @@ pub async fn init() -> Result<Setup> {
         // but a derive macro could do this a bit better if this becomes too large.
         .set_override_option("api-key", args.api_key.clone())?
         .set_override_option("base-url", args.base_url.clone())?
+        .set_override_option("chroot-dir", args.chroot_dir.clone())?
+        .set_override_option("command-path", args.command_dir.clone())?
         .set_override_option("model", args.model.clone())?
         .set_override_option("instruct", args.model.clone())?
         .set_override_option("channels", args.channels.clone())?